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SpaNorm: Spatially aware library size normalisation3 months ago
SpaNorm | Load count data | Normalise count data | Scaling to large datasets | Using Seurat objects | Computing alternative adjustments using a precomputed SpaNorm fit | Varying model complexity | Enhancing signal | Exploring learnt functions | Identifying spatially variable genes | GLM-PCA | Fitting a custom model | Session information | References
SubcellularSpatialData: Annotated spatial transcriptomics datasets from 10x Xenium, NanoString CosMx and BGI STOmics.3 years ago
SubcellularSpatialData | Download data from the SubcellularSpatialData R package | Summarising transcripts into cells, bins, and regions | Session Info